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Analysis Technique: Direct simulation

A reliable and transparent approach to implementing particle-based models.

Related PhD Projects

Research Project: Bayesian inference of active Brownian motion

For the study of motile cells and other self-propelled particles it is often key to extract quantitative features from trajectories of these particles, both to quantify experimental trajectories and to parametrise theoretical models.

University of Göttingen, Germany

Research Project: Bottom-up modelling of dense bacterial suspensions

Dense active suspensions, such as those formed by swarming bacteria, constitute a type of active matter that is particularly hard to model.

CEA Saclay/Université Paris-Saclay, France

Research Project: Collective tug-of-war dynamics: from molecular motors to ant groups

The emergence of directed transport as a collective behaviour of many microscopic constituents is a ubiquitous problem in the statistical physics of active particles.

The University of Edinburgh, United Kingdom

Research Project: Control theory for topological active matter

Experimental techniques have demonstrated the ability to alter the collective dynamics of active systems with various types of external perturbations.

University of Luxembourg, Luxembourg
Simulations of Self-propelled hard disks, at surface ratio 0.85 and active (Pe number= 100). Each particle is colored according to its local orientational order (hexatic order parameter). Black spots indicate topological defects of different nature. More information in Soft Matter, 2022,18, 566. Credit: Pasquale Digregorio

Research Project: Defect dynamics in pulsating active matter

Some collective states in active matter exhibit topological properties through the formation of vortices and defects. In some living systems, defects have been shown to have important biological functions.

The University of Barcelona, Spain
Long-range velocity correlations in active matter from active dopants.  Credit: Abbaspour et al

Research Project: Dense active matter and the cage escape dynamics of active particles

Passive particles form amorphous solids or glasses at high densities. The same is true of active particles that model living matter such as confluent tissues.

University of Göttingen, Germany
Credit: Torben Sunkel

Research Project: Elucidating the role of mechano-signalling feedback in dense cellular collectives

Collective tissue behaviour is inherently a multiscale phenomenon that is governed by complex biochemical and mechanical processes occurring simultaneously at the molecular, cellular, and tissue scales.

TU Eindhoven, The Netherlands

Research Project: Exploring active field theories to unravel solidification of protein condensates

The spatial organisation of proteins into dense condensates, widely attributed to nonequilibrium phase separation, offers a route to recruit or sequester proteins involved in functions at the cellular level.

University of Stuttgart, Germany

Research Project: Growth of cells in viscoelastic medium

Typically, the complex environments in which living systems reside are viscoelastic fluids. For example, the extracellular matrix comprises cross-linked, semiflexible polymeric filaments that respond sensitively to even small stresses generated by cells.

Institute of Physical Chemistry Polish Academy of Sciences, Poland
Credit: Lukas Hupe

Research Project: Proliferating active media

While active matter theory has successfully advanced our understanding of the collective dynamics resulting from individual sources of activity, multiple active processes usually act in concert in real biological systems.

Max-Planck Institute for Dynamics and Self-Organization/University of Göttingen, Germany